Reshape KASP data to wide format for same samples genotyped with multiple KASP markers.

Usage

kasp_reshape_wide(
  x,
  subset = "MasterPlate",
  snp_id = "SNPID",
  geno_call = "Call",
  idvar = "SubjectID",
  blank = "NTC"
)

Arguments

x: A data frame of KASP genotype calls for one or multiple plates.
subset: A character value indicating the column name for master plate having the same samples in x.
snp_id: A character value indicating the column name for SNP IDs in x.
geno_call: A character value indicating the column name for KASP genotype calls in x.
idvar: A character value indicating the column name for unique subject IDs of samples in x.
blank: A character value indicating `No Template Controls (NTC)` genotype calls.

Value

A list object with reshaped data for master plates that have the same subject IDs as the components. The components are data frames with Column 1 as the subject IDs and the rest of the columns as the number of KASP markers assayed for each master plate.

Examples

# \donttest{
# example code
library(panGenomeBreedr)
dat1 <- panGenomeBreedr::beta_carotene
plate_wide <- kasp_reshape_wide(x = dat1,
                                subset = 'MasterPlate',
                                snp_id = 'SNPID',
                                geno_call = 'Call',
                                idvar = "SubjectID",
                                blank = 'NTC')
# }