Get a summary of the number of samples per 96-well plate in a multi-plate KASP assay.

Get a summary of the number of samples per 96-well plate in a multi-plate KASP assay.

Usage

nsamples_plate(
  x,
  subset = "plates",
  snp_id = "SNPID",
  plate_id = "MasterPlate"
)

Arguments

x

A data frame of KASP genotype calls for one or multiple plates.

subset

A character value indicating the column name for taking subsets of x for processing; default is the `plates`.

snp_id

A character value indicating the column name for SNP IDs in x.

plate_id

A character value indicating the column name for master plate having the same samples in x.

Value

A list object with plates and a summary of number of samples per plate as components.

Examples

# \donttest{
# example code
library(panGenomeBreedr)
dat1 <- panGenomeBreedr::beta_carotene
dat1 <- nsamples_plate(x = dat1,
                     subset = 'plates',
                     snp_id = 'SNPID',
                     plate_id = 'MasterPlate'
                    )$summ
# }