Plot kasp genotyping plate layout.

Usage

plot_plate(
  x,
  well = "MasterWell",
  color = "Color",
  geno_call = "Call",
  snp_id = "SNPID",
  pdf = TRUE,
  width = 8,
  height = 5,
  filename = "plate_layout",
  text_size = 12,
  ...
)

Arguments

x: A list object of KASP genotype calls processed by the `kasp_color()` function.
well: A character value representing the column name for genotyping plate wells.
color: A character value indicating the column name of assigned colors in x.
geno_call: A character indicating the column name used for genotype
snp_id: A character value indicating the column name for SNP IDs in x.
pdf: A logical value indicating whether to save plot as a pdf graphic
width: A numeric value for the width of pdf device.
height: A numeric value for the height of pdf device.
filename: A character value for path or file name for saving pdf.
text_size: A numeric value for text size in plot output.
...: Other valid arguments that can be passed to ggplot2.

Value

A ggplot graphical output of plate layout.

Examples

# example code
library(panGenomeBreedr)
# \donttest{
# Assign KASP colors to plates
dat1 <- kasp_color(x = panGenomeBreedr::kasp_dat,
                   subset = 'MasterPlate',
                   sep = ':',
                   geno_call = 'Call',
                   uncallable = 'Uncallable',
                   unused = '?',
                   blank = 'NTC')
#> Marker in Plate SE-24-0392_P01_d2 failed! Check genotype calls.
#> Marker in Plate SE-24-0392_P01_d1 failed! Check genotype calls.
#> Marker in Plate SE-24-0395_P01_d2 failed! Check genotype calls.
#> Marker in Plate SE-24-0395_P01_d1 failed! Check genotype calls.
#> Marker in Plate SE-24-0397_P01_d2 failed! Check genotype calls.
#> Marker in Plate SE-24-0397_P01_d1 failed! Check genotype calls.
# Plot Plate 12 to see sample arrangement
plot_plate(dat1[12], pdf = FALSE)
#> $`SE-24-0396_P01_d1`

#> 
# }